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Last Build Date: Thu, 24 Sep 2015 16:36:11 +0000

 



Comment on What’s the Answer? (visualize genomic rearrangements) by Chris Upton

Thu, 24 Sep 2015 16:36:11 +0000

Dotplots are perhaps the simplest way to look for/at rearrangements: http://athena.bioc.uvic.ca/virology-ca-tools/jdotter/



Comment on What’s The Answer? (effective altruists in bioinformatics) by Bill Whitford

Fri, 03 Jul 2015 18:30:04 +0000

Here is my assistance, for what it's worth. The answer to your first question depends a lot upon how you define "Impact". In one sense, rubber manufacturers have a lot of impact in society. Without lorrie tires, we could it get food to the shops. In another sense, working at an animal shelter has tremendous impact. Suffering dogs all over the world need help. In yet another sense, joining a convent and "serving God" your whole life has the most eternal impact. So, really, before you try to answer the the question, you have to discover what YOU believe valuable "impact" is. Is.



Comment on World Tour of Genomics Resources II handouts, webinar follow-up post by Mary

Thu, 21 May 2015 18:16:16 +0000

Reply to Mark on his HIV questions: We don't answer specific research questions, but I would like to point you to various HIV resources from our database: http://www.hiv.lanl.gov/content/index http://hivdb.stanford.edu/ http://gsid.org/gsid_hiv_data_browser.html Perhaps you can find folks who work on the type of research you are interested in at those links.



Comment on Phytozome notice, new and improved v10 coming soon [see update] by David Goodstein

Mon, 27 Apr 2015 22:08:11 +0000

actually, Phytozome v10 has been available for more than a year. Only change is retirement of v9.



Comment on Video Tip of The Week: Jalview for multiple sequence alignment editing and visualization by Chris Upton

Wed, 08 Apr 2015 17:02:25 +0000

Have you tried Base-By-Base? Variety of unique features.



Comment on Video Tip of the Week: CRISPRdirect for editing tools and off-target information by Mary

Tue, 17 Mar 2015 13:11:10 +0000

I wanted to collect other CRISPR software tools here as well, as I continue to evaluate them. Just spotted this one today: https://twitter.com/TarquinColes/status/577812632985583616 More info: http://www.horizondiscovery.com/what-we-do/discovery-toolbox/genassist-crispr--raav-genome-editing-tools Tool itself: https://horizon.deskgen.com/wizard.html



Comment on Video Tip of the Week: UCSC #Ebola Genome Portal by Maureen Coffey

Sun, 19 Oct 2014 17:24:09 +0000

Just had a look at the NLM resource page you linked to. Much more useful than most of the stuff I found so far in my research. unfortunately, this frantic search for an Ebola vaccine or even acute treatment options may still be "too little too late". if the SARS endemic is any guide, which was far less dangerous, economies could collapse under the curtailed travel and transport of goods as well as the increasing burden of quarantine and treatment and hence the resources might not be forthcoming just as in a war the resources go to the front if it is threatened, not into research for the next generation weapon ...



Comment on Video Tip of the Week: UCSC #Ebola Genome Portal by Sonia

Mon, 13 Oct 2014 09:51:23 +0000

Thanks for the video tutorial. I am a Master degree student of Bioinformatics. This video tutorial on UCSC Ebola Genome Portal has offered great help to me in my thesis, which I will be submitting in this semester.



Comment on Video Tip of the Week: UCSC #Ebola Genome Portal by Jim Kent

Wed, 08 Oct 2014 19:12:49 +0000

Thanks much for putting this together!